Hotels in Henderson Harbor

Q: What accommodations do travelers like in Henderson Harbor?

Guests like The GillHouse , Henderson Harbor Cottage w/ Lake Access! and Harbor House Inn .

Q: Where should I stay in Henderson Harbor if I'm looking for an affordable accommodation?

An inexpensive option worth considering is The GillHouse .

Where to?

Dates

December 2025

January 2026

Free cancellation options if plans change

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Where to stay in Henderson Harbor?

$140 nightly

Dec 23 - Dec 24

Total with taxes and fees

$116 nightly

Jan 2 - Jan 3, 2026

Total with taxes and fees

$93 nightly

Dec 19 - Dec 20

Total with taxes and fees

$122 nightly

Jan 4 - Jan 5, 2026

Total with taxes and fees

$103 nightly

Dec 22 - Dec 23

Total with taxes and fees

Desk, iron/ironing board, free cribs/infant beds, free WiFi

$85 nightly

Jan 4 - Jan 5, 2026

Total with taxes and fees

$63 nightly

Dec 21 - Dec 22

Total with taxes and fees

$72 nightly

Dec 26 - Dec 27

Total with taxes and fees

$55 nightly

Jan 11 - Jan 12, 2026

Total with taxes and fees

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Go beyond your typical stay in Henderson Harbor

Pet friendly

Pool

Top landmarks in Henderson Harbor

Saiff Charters

Saiff Charters is 0.3 mi (0.5 km) from central Henderson Harbor, why not stop by during your stay.

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Learn more about Henderson Harbor

Henderson Harbor is well-known for its attractions such as Lake Ontario and Saiff Charters.

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Check out reviews of Henderson Harbor hotels guests love

Candlewood Suites Watertown Fort Drum by IHG

10/10 Excellent

"It waa very welcoming. Will be back!"

Comfort Inn & Suites Watertown - 1000 Islands

10/10 Excellent

"Spotless room. Staff were great. Breakfast was ok. Heater didn't work in room 507. I had heat set to 90 and didn't kick on 1 time. Water pressure and temp of shower was great. Very quiet. We got stranded in a snow storm and we needed a place last minute for us and our 2 children. Quick check in. I recommend this place."

Hilton Garden Inn Watertown/Thousand Islands

10/10 Excellent

"All of the staff were nice and even managers were even seen in their offices or in the hallways throughout the weekend. Also it smelled so good from the fresh clean room to the great food that The Grille was making. I think the only down side was maybe the road outback however I think the TV drowned it out. "

Best Western Watertown Fort Drum

4/10 Poor

"the bathroom wasnt verry clean the shower was loud the room had a light smell we had to keep asking for towels and was cloths there was a smell of marijuana in the lobby the breakfast area wasnt cleaned regularly a lot of times i went to get something to eat thier wasnt hardly anything there we will never stay there again"

Frequently asked questions

How much does a hotel room cost in Henderson Harbor?

You can discover great hotels in Henderson Harbor from $56 with properties to suit all budgets and needs. If you're after an affordable hotel in Henderson Harbor that meets all of your requirements, set your filters and then sort the results by "Price: low to high".

How can I find deals and earn rewards at Henderson Harbor hotels?

Discover great deals on Henderson Harbor hotel stays with Hotels.com. Take a look at hotel prices mid-week or during the low season as to find those off-peak deals. If you're up for a spontaneous trip, don't forget to check out our last-minute deals on Henderson Harbor hotels.

Can I book Henderson Harbor hotels with free cancellation?

It's easy to book a refundable Henderson Harbor hotel on Hotels.com. Simply filter hotels by "Property cancellation options" and select "Fully refundable property". Many hotels offer free cancellation, so you can receive a refund if you need to cancel. Some hotels do require cancelling more than 24 hours before check-in, so double-check your booking beforehand.

What accommodations do travelers like in Henderson Harbor?

Guests like The GillHouse, Henderson Harbor Cottage w/ Lake Access! and Harbor House Inn.

Can I book refundable accommodations in Henderson Harbor?

If you want the flexibility to change your plans to Henderson Harbor, most hotels provide refundable* bookable rates. You can see these accommodations by searching our site and using the "fully refundable" filter to narrow down the results.

Where should I stay in Henderson Harbor if I'm looking for an affordable accommodation?

An inexpensive option worth considering is The GillHouse.

What will the weather in Henderson Harbor be like during my vacation?

July and August are typically the warmest months in Henderson Harbor when the average temp is 66°F. January and February are the coldest months when the average temperature is 27°F. October and July are the months with the most rain.

Why should I book my Henderson Harbor hotel with Hotels.com?

There are lots of reasons to book your Henderson Harbor trip with us: our free cancellations on selected hotels gives you flexibility, and with One Key™, our rewards program, you will be able to earn and use OneKeyCash™* on all eligible bookings such as hotels, car rentals, flights, vacation rentals and more on Hotels.com, Expedia and Vrbo.

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